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LOC4352593 uncharacterized LOC4352593 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352593, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4352593
Gene description
uncharacterized LOC4352593
Locus tag
OSNPB_120573000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 2.8), roots after flowering (RPKM 2.4) and 6 other tissues See more
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Genomic context

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See LOC4352593 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24307250..24314610)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23617089..23624617)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC4352592 Neighboring gene scarecrow-like protein 34 Neighboring gene protein transport protein SEC7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4352593
Names
Os12g0573000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24307250..24314610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306601.1 → XP_066162698.1  uncharacterized protein LOC4352593

    UniProtKB/TrEMBL
    B9GDW3, Q2QNA4

  2. XM_066306603.1 → XP_066162700.1  uncharacterized protein LOC4352593

    UniProtKB/TrEMBL
    B9GDW3, Q2QNA4

  3. XM_015765283.3 → XP_015620769.1  uncharacterized protein LOC4352593

    UniProtKB/TrEMBL
    B9GDW3, Q2QNA4
    Conserved Domains (1) summary
    pfam03703
    Location:113 → 175
    bPH_2; Bacterial PH domain

  4. XM_066306605.1 → XP_066162702.1  uncharacterized protein LOC4352593

    UniProtKB/TrEMBL
    B9GDW3, Q2QNA4

  5. XM_066306604.1 → XP_066162701.1  uncharacterized protein LOC4352593

    UniProtKB/TrEMBL
    B9GDW3, Q2QNA4

RNA

  1. XR_010738678.1 RNA Sequence

  2. XR_010738679.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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