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LOC4352691 wall-associated receptor kinase-like 14 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352691, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4352691
Gene description
wall-associated receptor kinase-like 14
Locus tag
OSNPB_120595800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 5.4), leaves after flowering (RPKM 3.0) and 6 other tissues See more
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Genomic context

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See LOC4352691 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25727356..25738815)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25014987..25026462)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267868 Neighboring gene SKP1-like protein 9 Neighboring gene uncharacterized LOC107279779 Neighboring gene octanoyltransferase LIP2p, chloroplastic Neighboring gene RING-H2 finger protein ATL65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
wall-associated receptor kinase-like 14
Names
Os12g0595800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    25727356..25738815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306244.1 → XP_066162341.1  wall-associated receptor kinase-like 14 isoform X4

  2. XM_015764330.3 → XP_015619816.1  wall-associated receptor kinase-like 14 isoform X3

    UniProtKB/TrEMBL
    A0A0P0YCB3
    Conserved Domains (2) summary
    pfam12947
    Location:249 → 283
    EGF_3; EGF domain
    cl21453
    Location:376 → 652
    PKc_like; Protein Kinases, catalytic domain

  3. XM_015764328.3 → XP_015619814.1  wall-associated receptor kinase-like 14 isoform X1

    UniProtKB/TrEMBL
    B7EKS1
    Conserved Domains (2) summary
    cl21453
    Location:386 → 662
    PKc_like; Protein Kinases, catalytic domain
    cl21504
    Location:262 → 293
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  4. XM_026022163.2 → XP_025877948.1  wall-associated receptor kinase-like 14 isoform X2

    UniProtKB/TrEMBL
    A2ZMC1, A3CJ32, Q2QMQ0
    Conserved Domains (2) summary
    pfam13947
    Location:41 → 143
    GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
    cl21453
    Location:383 → 659
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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