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LOC4352791 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352791, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4352791
Gene description
2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like
Locus tag
OSNPB_120615400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
E37; OsJ_36874
Expression
Broad expression in leaves before flowering (RPKM 165.6), flowers (RPKM 87.2) and 5 other tissues See more
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Genomic context

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See LOC4352791 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26817126..26819571, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26101115..26103556, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354738 Neighboring gene wall-associated receptor kinase 2 Neighboring gene uncharacterized LOC136354739 Neighboring gene putative hydrolase C777.06c Neighboring gene putative hydrolase C777.06c Neighboring gene pentatricopeptide repeat-containing protein At5g41170, mitochondrial Neighboring gene protein DETOXIFICATION 41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
Names
37 kDa inner envelope membrane protein
LOC_Os12g42090
MPBQ/MSBQ methyltransferase
Protein VTE3 homolog
NP_001391669.1
NP_001391670.1
XP_066162095.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404740.1 → NP_001391669.1  2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK105795, AP014968, AU030611, CA755971, CI223786, CI693432
    UniProtKB/TrEMBL
    Q2QM70

  2. NM_001404741.1 → NP_001391670.1  2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK105795, AU029553, CI223786, CI693432
    UniProtKB/Swiss-Prot
    A0A0P0YD53, Q2QM69
    UniProtKB/TrEMBL
    A2ZMQ9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    26817126..26819571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066305998.1 → XP_066162095.1  2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    Q2QM70
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QM69.2 GenPept UniProtKB/Swiss-Prot:Q2QM69

Gene LinkOut

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Molecular Biology Databases
Research Materials