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LOC4352799 transcription factor PCF8-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352799, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352799
Gene description
transcription factor PCF8-like
Locus tag
OSNPB_120616400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PCF8
Expression
Broad expression in leaves before flowering (RPKM 5.4), flower buds (RPKM 3.2) and 4 other tissues See more
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Genomic context

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See LOC4352799 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26871176..26874905)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26154817..26158745)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279701 Neighboring gene large ribosomal subunit protein uL14mz Neighboring gene cation/H(+) antiporter 19 Neighboring gene protease Do-like 5, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. DNA binding and dimerization specificity and potential targets for the TCP protein family. Kosugi S, et al. Plant J, 2002 May. PMID 12000681
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PCF8
Names
LOC_Os12g42190

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423628.1 → NP_001410557.1  transcription factor PCF8

    Status: VALIDATED

    Source sequence(s)
    AB071808, AK106830, AP014968
    UniProtKB/Swiss-Prot
    A2ZMR9, Q0ILW5, Q2QM59, Q8LP97

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    26871176..26874905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QM59.1 GenPept UniProtKB/Swiss-Prot:Q2QM59

Gene LinkOut

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Molecular Biology Databases
Research Materials