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LOC4352928 sodium/hydrogen exchanger 8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352928, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4352928
Gene description
sodium/hydrogen exchanger 8
Locus tag
OSNPB_120641100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NHA1; SOS1
Expression
Broad expression in roots before flowering (RPKM 55.6), flower buds (RPKM 42.9) and 5 other tissues See more
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Genomic context

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See LOC4352928 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (28214145..28226776, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (27495769..27508846, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 70-1-like Neighboring gene actin-1-like Neighboring gene uncharacterized LOC4352930 Neighboring gene sucrose transport protein SUT2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Conservation of the salt overly sensitive pathway in rice. Martínez-Atienza J, et al. Plant Physiol, 2007 Feb. PMID 17142477, Free PMC Article
  2. Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.). Zhou GA, et al. DNA Seq, 2006 Feb. PMID 16753814
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of intracellular pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/hydrogen exchanger 8
Names
Na+/H+ antiporter
Os12g0641100
putative Na+/H+ antiporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    28214145..28226776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763865.3 → XP_015619351.1  sodium/hydrogen exchanger 8

    UniProtKB/TrEMBL
    A0A6F8F8Q2, A0A8J8XWY1, B8BN82, B9GEH8, Q2QLI4, Q5ICN3
    Conserved Domains (2) summary
    COG0025
    Location:11 → 442
    NhaP; NhaP-type Na+/H+ or K+/H+ antiporter [Inorganic ion transport and metabolism]
    COG0664
    Location:715 → 889
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

RNA

  1. XR_010738509.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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