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slc17a9b solute carrier family 17 member 9b [ Danio rerio (zebrafish) ]

Gene ID: 436908, updated on 2-Nov-2024

Summary

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Official Symbol
slc17a9bprovided by ZNC
Official Full Name
solute carrier family 17 member 9bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-380
See related
Ensembl:ENSDARG00000011049 AllianceGenome:ZFIN:ZDB-GENE-040718-380
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sb:cb849; zgc:92222; wu:fa99h02
Summary
Predicted to enable secondary active transmembrane transporter activity. Predicted to be involved in ATP transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Is expressed in several structures, including anterior axial hypoblast; axis; cranium; hatching gland; and polster. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human SLC17A9 (solute carrier family 17 member 9). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See slc17a9b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (17522949..17550649)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (17596606..17622802)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 5ab Neighboring gene uncharacterized LOC137489109 Neighboring gene GID complex subunit 8 homolog b (S. cerevisiae) Neighboring gene basic helix-loop-helix family, member e23 Neighboring gene uncharacterized LOC137489110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Understanding the complexity of epimorphic regeneration in zebrafish caudal fin tissue: A transcriptomic and proteomic approach. Banu S, et al. Genomics, 2022 Mar. PMID 35134499
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables secondary active transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ATP transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 17 member 9b
Names
solute carrier family 17 (vesicular nucleotide transporter), member 9b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002635.1 → NP_001002635.1  solute carrier family 17 member 9b

    See identical proteins and their annotated locations for NP_001002635.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075944
    UniProtKB/TrEMBL
    A0A8M1N118, Q6DHM5
    Related
    ENSDARP00000024649.6, ENSDART00000002714.7
    Conserved Domains (2) summary
    cd06174
    Location:51 → 446
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:54 → 409
    MFS_1; Major Facilitator Superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    17522949..17550649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216730.1 → XP_068072831.1  solute carrier family 17 member 9b isoform X1

Nucleotide Protein
Heading Accession and Version

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