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snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) [ Danio rerio (zebrafish) ]

Gene ID: 436976, updated on 9-Dec-2024

Summary

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Official Symbol
snrnp27provided by ZNC
Official Full Name
small nuclear ribonucleoprotein 27 (U4/U6.U5)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-457
See related
Ensembl:ENSDARG00000035625 AllianceGenome:ZFIN:ZDB-GENE-040718-457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92615
Summary
Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See snrnp27 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (13767743..13778726, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (13267526..13278509, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene neuronal intermediate filament family member 1 Neighboring gene MAX dimerization protein 1 Neighboring gene uncharacterized LOC137495562 Neighboring gene adducin 2 (beta) Neighboring gene folliculogenesis specific bHLH transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Names
U4/U6.U5 snRNP 27 kDa protein
U4/U6.U5 tri-snRNP-associated protein 3
U4/U6.U5-27K

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002703.2 → NP_001002703.1  U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

    See identical proteins and their annotated locations for NP_001002703.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076105
    UniProtKB/Swiss-Prot
    Q6DH74
    Related
    ENSDARP00000051654.4, ENSDART00000051655.5
    Conserved Domains (1) summary
    pfam08648
    Location:43 → 154
    DUF1777; Protein of unknown function (DUF1777)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    13767743..13778726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DH74.1 GenPept UniProtKB/Swiss-Prot:Q6DH74

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