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ccdc149b coiled-coil domain containing 149b [ Danio rerio (zebrafish) ]

Gene ID: 436983, updated on 2-Nov-2024

Summary

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Official Symbol
ccdc149bprovided by ZNC
Official Full Name
coiled-coil domain containing 149bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-465
See related
Ensembl:ENSDARG00000020857 AllianceGenome:ZFIN:ZDB-GENE-040718-465
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ccdc149; fi16d12; ccdc149a; zgc:92601; wu:fi16d12
Summary
Orthologous to human CCDC149 (coiled-coil domain containing 149). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ccdc149b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (40034042..40053248)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (39315958..39335177)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 2 associated protein 2 Neighboring gene leucine-rich repeat LGI family, member 2b Neighboring gene si:dkey-117m1.4 Neighboring gene ciliary neurotrophic factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Rmrp Mutation Disrupts Chondrogenesis and Bone Ossification in Zebrafish Model of Cartilage-Hair Hypoplasia via Enhanced Wnt/β-Catenin Signaling. Sun X, et al. J Bone Miner Res, 2019 Nov. PMID 31237961
  2. Comparative evolutionary genomics of medaka and three-spined stickleback fabp2a and fabp2b genes with fabp2 of zebrafish. Parmar MB, et al. Genome, 2013 Jan. PMID 23379336
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 149-B
Names
coiled-coil domain containing 149
coiled-coil domain-containing protein 149-A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002710.2 → NP_001002710.2  coiled-coil domain-containing protein 149-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT737206
    UniProtKB/TrEMBL
    A0A8M3ATZ7
    Related
    ENSDARP00000014360.6, ENSDART00000011727.7

  2. NM_001431081.1 → NP_001418010.1  coiled-coil domain-containing protein 149-B isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT737206
    UniProtKB/TrEMBL
    A0A8M2B6N6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    40034042..40053248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160000.5 → XP_005160057.1  coiled-coil domain-containing protein 149-B isoform X1

    UniProtKB/Swiss-Prot
    Q6DH86
    UniProtKB/TrEMBL
    A0A8M2B6T2
    Conserved Domains (2) summary
    pfam09789
    Location:22 → 335
    DUF2353; Uncharacterized coiled-coil protein (DUF2353)
    cl03075
    Location:147 → 194
    GrpE; nucleotide exchange factor GrpE

  2. XM_021471807.2 → XP_021327482.1  coiled-coil domain-containing protein 149-B isoform X2

    UniProtKB/Swiss-Prot
    Q6DH86
    UniProtKB/TrEMBL
    A0A8M9P9A7
    Conserved Domains (1) summary
    pfam09789
    Location:22 → 335
    DUF2353; Uncharacterized coiled-coil protein (DUF2353)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394500.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    20475..39673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DH86.1 GenPept UniProtKB/Swiss-Prot:Q6DH86

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