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ubtd2 ubiquitin domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 436991, updated on 2-Nov-2024

Summary

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Official Symbol
ubtd2provided by ZNC
Official Full Name
ubiquitin domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-473
See related
Ensembl:ENSDARG00000069184 AllianceGenome:ZFIN:ZDB-GENE-040718-473
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:91797
Summary
Predicted to be located in cytoplasm. Orthologous to human UBTD2 (ubiquitin domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ubtd2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (35215830..35281616)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (35181340..35247126)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488837 Neighboring gene uncharacterized LOC137488838 Neighboring gene interleukin 12B, b Neighboring gene ubiquitin-like domain containing CTD phosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Delta-sarcoglycan is required for early zebrafish muscle organization. Guyon JR, et al. Exp Cell Res, 2005 Mar 10. PMID 15707578
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002718.2 → NP_001002718.2  ubiquitin domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    BC076510, EH608257
    UniProtKB/Swiss-Prot
    Q6DG43
    UniProtKB/TrEMBL
    F1QPG5
    Related
    ENSDARP00000117284.1, ENSDART00000135256.2
    Conserved Domains (3) summary
    smart00213
    Location:157 → 227
    UBQ; Ubiquitin homologues
    pfam16455
    Location:32 → 136
    UBD; Ubiquitin-binding domain
    cl00155
    Location:158 → 227
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    35215830..35281616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395096.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    199399..263419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DG43.1 GenPept UniProtKB/Swiss-Prot:Q6DG43

Gene LinkOut

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