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WHAMMP2 WHAMM pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 440253, updated on 17-Jun-2024

Summary

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Official Symbol
WHAMMP2provided by HGNC
Official Full Name
WHAMM pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:32360
See related
AllianceGenome:HGNC:32360
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
WHAMML2; WHDC1L2
Expression
Broad expression in bone marrow (RPKM 3.7), fat (RPKM 2.2) and 25 other tissues See more
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Genomic context

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See WHAMMP2 in Genome Data Viewer
Location:
15q13.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (28737583..28758362)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (26514304..26535081)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (28982729..29003508)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene HERC2 pseudogene 9 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene Neighboring gene uncharacterized LOC107984746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28947514-28948014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28948015-28948515 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28950433-28951142 Neighboring gene golgin A8 family member M Neighboring gene RNA, 7SL, cytoplasmic 719, pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:28989516-28990108 Neighboring gene zinc finger FYVE-type containing 9 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:29029486-29029986 Neighboring gene Dexi homolog (mouse) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Large genomic duplicons map to sites of instability in the Prader-Willi/Angelman syndrome chromosome region (15q11-q13). Christian SL, et al. Hum Mol Genet, 1999 Jun. PMID 10332034
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2
  • WAS protein homolog associated with actin, golgi membranes and microtubules-like 2 (pseudogene)
  • WAS protein homology region 2 domain containing 1-like 2 (pseudogene)

Clone Names

  • FLJ33935

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026589.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC055876

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    28737583..28758362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    899588..920365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    1013374..1034151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    26514304..26535081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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Research Materials