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LINC00851 long intergenic non-protein coding RNA 851 [ Homo sapiens (human) ]

Gene ID: 440757, updated on 22-Oct-2024

Summary

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Official Symbol
LINC00851provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 851provided by HGNC
Primary source
HGNC:HGNC:43424
See related
Ensembl:ENSG00000237282 AllianceGenome:HGNC:43424
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DZANK1-AS1
Expression
Restricted expression toward testis (RPKM 5.7) See more
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Genomic context

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See LINC00851 in Genome Data Viewer
Location:
20p11.23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (18379049..18381484)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (18430156..18432593)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (18359693..18362128)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ZNF133 antisense RNA 1 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC107985418 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:18369569-18370768 Neighboring gene uncharacterized LOC124904877 Neighboring gene double zinc ribbon and ankyrin repeat domains 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12702 Neighboring gene glucosaminyl (N-acetyl) transferase 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • DZANK1 antisense RNA 1 (non-protein coding)
  • DZANK1 antisense RNA 1 (tail to tail)

Clone Names

  • MGC44328

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049646, BC033985
    Related
    ENST00000423033.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    18379049..18381484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    18430156..18432593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004344.2: Suppressed sequence

    Description
    NM_001004344.2: This RefSeq was permanently suppressed because currently there is insufficient support for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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