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PTMAP10 prothymosin alpha pseudogene 10 [ Homo sapiens (human) ]

Gene ID: 442727, updated on 27-Aug-2024

Summary

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Official Symbol
PTMAP10provided by HGNC
Official Full Name
prothymosin alpha pseudogene 10provided by HGNC
Primary source
HGNC:HGNC:53978
See related
AllianceGenome:HGNC:53978
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
7q33
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (138403689..138404651, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (139713382..139714345, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (138088434..138089396, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901754 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:137928082-137928696 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:137937428-137937826 Neighboring gene ribosomal protein S17 pseudogene 12 Neighboring gene Sharpr-MPRA regulatory region 8802 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4907 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:138062972-138063578 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:138080812-138081666 Neighboring gene Sharpr-MPRA regulatory region 5293 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:138118122-138118654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:138118655-138119187 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:138143459-138143969 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:138144373-138145155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18686 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18687 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 12555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138163790-138164350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:138164351-138164911 Neighboring gene small nucleolar RNA U13 Neighboring gene tripartite motif containing 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009434.4 

    Range
    101..1063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    138403689..138404651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    139713382..139714345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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