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dop1a DOP1 leucine zipper like protein A [ Danio rerio (zebrafish) ]

Gene ID: 448893, updated on 2-Nov-2024

Summary

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Official Symbol
dop1aprovided by ZNC
Official Full Name
DOP1 leucine zipper like protein Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050309-65
See related
Ensembl:ENSDARG00000019962 AllianceGenome:ZFIN:ZDB-GENE-050309-65
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
dopey1; im:6911215; im:7148241
Summary
Predicted to act upstream of or within Golgi to endosome transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1A (DOP1 leucine zipper like protein A). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See dop1a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (33062327..33097384, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (33108516..33143362, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene synaptosome associated protein 91a Neighboring gene clathrin coat assembly protein AP180-like Neighboring gene proline-rich nuclear receptor coactivator 2 Neighboring gene cannabinoid receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation. Gallagher TL, et al. Dev Biol, 2017 Sep 1. PMID 28648842, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within Golgi to endosome transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein dopey-1
Names
dopey family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    33062327..33097384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292499.4 → XP_009290774.1  protein dopey-1 isoform X1

    See identical proteins and their annotated locations for XP_009290774.1

    UniProtKB/TrEMBL
    A0A8M3AQT1, F1R226
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 297
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2104 → 2423
    Dopey_N; Dopey, N-terminal

  2. XM_009292500.4 → XP_009290775.1  protein dopey-1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PUY5
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 295
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2095 → 2414
    Dopey_N; Dopey, N-terminal

  3. XM_009292501.4 → XP_009290776.1  protein dopey-1 isoform X3

    UniProtKB/TrEMBL
    A0A8M3AJB2
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 297
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2094 → 2413
    Dopey_N; Dopey, N-terminal

  4. XM_009292498.4 → XP_009290773.1  protein dopey-1 isoform X1

    See identical proteins and their annotated locations for XP_009290773.1

    UniProtKB/TrEMBL
    A0A8M3AQT1, F1R226
    Related
    ENSDARP00000133813.1, ENSDART00000166617.2
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 297
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2104 → 2423
    Dopey_N; Dopey, N-terminal

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394965.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    79682..114739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473017.2 → XP_021328692.1  protein dopey-1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AQT1, F1R226
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 297
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2104 → 2423
    Dopey_N; Dopey, N-terminal

  2. XM_021473019.2 → XP_021328694.1  protein dopey-1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PUY5
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 295
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2095 → 2414
    Dopey_N; Dopey, N-terminal

  3. XM_021473020.2 → XP_021328695.1  protein dopey-1 isoform X3

    UniProtKB/TrEMBL
    A0A8M3AJB2
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 297
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2094 → 2413
    Dopey_N; Dopey, N-terminal

  4. XM_021473018.2 → XP_021328693.1  protein dopey-1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AQT1, F1R226
    Conserved Domains (2) summary
    pfam04118
    Location:13 → 297
    Dopey_N; Dopey, N-terminal
    cl04407
    Location:2104 → 2423
    Dopey_N; Dopey, N-terminal
Nucleotide Protein Strain
Heading Accession and Version

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