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gpatch1 G patch domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 448925, updated on 4-Jan-2025

Summary

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Official Symbol
gpatch1provided by ZNC
Official Full Name
G patch domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040914-65
See related
Ensembl:ENSDARG00000033418 AllianceGenome:ZFIN:ZDB-GENE-040914-65
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7135982; wu:fc11h11; wu:fj99h08
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See gpatch1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38265363..38277240)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (37994105..38005982)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:dkey-78a14.4 Neighboring gene CTD nuclear envelope phosphatase 1 regulatory subunit 1 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene low density lipoprotein receptor-related protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish cationic amino acid transporter/glycoprotein-associated family: sequence and spatiotemporal distribution during development of the transport system b(0,+) (slc3a1/slc7a9). Ellingsen S, et al. Fish Physiol Biochem, 2021 Oct. PMID 34338990, Free PMC Article
  2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
G patch domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204123.1 → NP_001191052.1  G patch domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    BC125820, CT607880
    UniProtKB/TrEMBL
    A0A8M1P3M2, A0JMC1, G1K2G6
    Related
    ENSDARP00000014631.10, ENSDART00000009386.11
    Conserved Domains (2) summary
    pfam01585
    Location:153 → 187
    G-patch; G-patch domain
    pfam07713
    Location:30 → 115
    DUF1604; Protein of unknown function (DUF1604)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    38265363..38277240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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