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Scgb2b20 secretoglobin, family 2B, member 20 [ Mus musculus (house mouse) ]

Gene ID: 494519, updated on 9-Dec-2024

Summary

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Official Symbol
Scgb2b20provided by MGI
Official Full Name
secretoglobin, family 2B, member 20provided by MGI
Primary source
MGI:MGI:3514009
See related
Ensembl:ENSMUSG00000094305 AllianceGenome:MGI:3514009
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C2c; Abpd; Abpbg20; Scgb2b2
Summary
Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Scgb2b20 in Genome Data Viewer
Location:
7 B1; 7 19.35 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (33063768..33065744, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (33364343..33366319, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene secretoglobin, family 1B, member 19 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_18564 Neighboring gene secretoglobin, family 1B, member 20 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Lacrimal androgen-binding proteins protect against Aspergillus fumigatus keratitis in mice. Lyu L, et al. Int Immunopharmacol, 2020 Nov. PMID 32916626
  2. Secretoglobins: sexually dimorphic expression of androgen-binding protein mRNA in mouse lacrimal glands. Remington SG, et al. Invest Ophthalmol Vis Sci, 2005 Jan. PMID 15623751
  3. Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in mouse and human airways. Reynolds SD, et al. Am J Respir Crit Care Med, 2002 Dec 1. PMID 12406855
  4. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Jackson BC, et al. Hum Genomics, 2011 Oct. PMID 22155607, Free PMC Article
  5. Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals. Laukaitis CM, et al. BMC Evol Biol, 2008 Feb 12. PMID 18269759, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Lacrimal androgen-binding proteins protect against Aspergillus fumigatus keratitis in mice.
    Title: Lacrimal androgen-binding proteins protect against Aspergillus fumigatus keratitis in mice.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
secretoglobin family 2B member 20
Names
allergen dI chain C2C
androgen binding protein delta
lacrimal androgen-binding protein delta
secretoglobin, family 2B, member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009952.2 → NP_001009952.2  secretoglobin family 2B member 20 precursor

    See identical proteins and their annotated locations for NP_001009952.2

    Status: VALIDATED

    Source sequence(s)
    CK616187, CK616386
    Consensus CDS
    CCDS21131.1
    UniProtKB/Swiss-Prot
    Q7M746, Q9JI02
    UniProtKB/TrEMBL
    J3QK77
    Related
    ENSMUSP00000137484.2, ENSMUST00000179248.2
    Conserved Domains (1) summary
    pfam09252
    Location:24 → 90
    Feld-I_B; Allergen Fel d I-B chain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    33063768..33065744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153231.1 → XP_036009124.1  secretoglobin family 2B member 20 isoform X2

    Conserved Domains (1) summary
    pfam09252
    Location:23 → 73
    Feld-I_B; Allergen Fel d I-B chain

  2. XM_006540168.3 → XP_006540231.1  secretoglobin family 2B member 20 isoform X1

    Conserved Domains (1) summary
    pfam09252
    Location:24 → 74
    Feld-I_B; Allergen Fel d I-B chain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9JI02.1 GenPept UniProtKB/Swiss-Prot:Q9JI02

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