slc30a9 solute carrier family 30 member 9 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc30a9provided by ZNC
Official Full Name: solute carrier family 30 member 9provided by ZNC
Primary source: ZFIN:ZDB-GENE-040724-254
See related: Ensembl:ENSDARG00000057272 AllianceGenome:ZFIN:ZDB-GENE-040724-254
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ZnT9; zgc:92098; si:ch211-240l14.4
Summary: Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in intracellular zinc ion homeostasis; regulation of mitochondrion organization; and zinc ion transport. Predicted to act upstream of or within zinc ion transmembrane transport. Predicted to be located in cytoplasmic vesicle and mitochondrial membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SLC30A9 (solute carrier family 30 member 9). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (44804369..44824627)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (44342950..44363318)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables antiporter activity	IEA Inferred from Electronic Annotation more info
enables monoatomic cation transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables zinc ion transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Process	Evidence Code	Pubs
involved_in intracellular zinc ion homeostasis	IBA Inferred from Biological aspect of Ancestor more info
involved_in intracellular zinc ion homeostasis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within monoatomic cation transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info
involved_in regulation of mitochondrion organization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in zinc ion transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within zinc ion transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within zinc ion transport	ISS Inferred from Sequence or Structural Similarity more info	PubMed
involved_in zinc ion transport	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cytoplasmic vesicle	ISS Inferred from Sequence or Structural Similarity more info
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	ISS Inferred from Sequence or Structural Similarity more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: proton-coupled zinc antiporter SLC30A9, mitochondrial

Names: solute carrier family 30 (zinc transporter), member 9; zinc transporter 9; znT-9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001008575.1 → NP_001008575.1 proton-coupled zinc antiporter SLC30A9, mitochondrial

See identical proteins and their annotated locations for NP_001008575.1

Status: PROVISIONAL

Source sequence(s)

BC086961

UniProtKB/Swiss-Prot

Q5PQZ3, Q7SZY6

Related

ENSDARP00000074317.5, ENSDART00000079866.7

Conserved Domains (4) summary

TIGR00598
Location:129 → 219

rad14; DNA repair protein

TIGR01297
Location:259 → 525

CDF; cation diffusion facilitator family transporter

pfam01545
Location:256 → 455

Cation_efflux; Cation efflux family

pfam12137
Location:428 → 573

RapA_C; RNA polymerase recycling family C-terminal