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rybpb RING1 and YY1 binding protein b [ Danio rerio (zebrafish) ]

Gene ID: 497613, updated on 27-Mar-2024

Summary

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Official Symbol
rybpbprovided by ZNC
Official Full Name
RING1 and YY1 binding protein bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061103-96
See related
Ensembl:ENSDARG00000053459 AllianceGenome:ZFIN:ZDB-GENE-061103-96
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Dedaf; zgc:153842
Summary
Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within apoptotic process and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human RYBP (RING1 and YY1 binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See rybpb in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (44008115..44044311, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (44010579..44046775, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 27 Neighboring gene prokineticin 2 Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor Neighboring gene glucoside xylosyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING1 and YY1-binding protein B
Names
DED-associated factor B
death effector domain-associated factor B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012373.2 → NP_001012373.1  RING1 and YY1-binding protein B

    See identical proteins and their annotated locations for NP_001012373.1

    Status: PROVISIONAL

    Source sequence(s)
    BC125899
    UniProtKB/Swiss-Prot
    A0JMJ2, Q5EG55
    UniProtKB/TrEMBL
    B2GSG2
    Related
    ENSDARP00000069979.4, ENSDART00000075497.6
    Conserved Domains (2) summary
    smart00547
    Location:21 → 43
    ZnF_RBZ; Zinc finger domain
    sd00030
    Location:23 → 42
    zf-RanBP2; RanBP2-type Zn finger [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    44008115..44044311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5EG55.1 GenPept UniProtKB/Swiss-Prot:Q5EG55

Gene LinkOut

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