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Tsnaxip1 translin-associated factor X interacting protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498944, updated on 2-Nov-2024

Summary

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Official Symbol
Tsnaxip1provided by RGD
Official Full Name
translin-associated factor X interacting protein 1provided by RGD
Primary source
RGD:1565341
See related
EnsemblRapid:ENSRNOG00000018954 AllianceGenome:RGD:1565341
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565341
Summary
Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 69.6), Lung (RPKM 14.7) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Tsnaxip1 in Genome Data Viewer
Location:
19q12
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50626846..50647848)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33716834..33734824)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37795432..37813424)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene Gfo/Idh/MocA-like oxidoreductase domain containing 2 Neighboring gene uncharacterized LOC134483349 Neighboring gene RAN binding protein 10 Neighboring gene uncharacterized LOC108348930 Neighboring gene centromere protein T Neighboring gene THAP domain containing 11 Neighboring gene nuclear transport factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Identification and characterization of cDNAs encoding four novel proteins that interact with translin associated factor-X. Bray JD, et al. Genomics, 2002 Jun. PMID 12036294
  2. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
translin-associated factor X-interacting protein 1
Names
translin-associated factor X (Tsnax) interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109130.1 → NP_001102600.1  translin-associated factor X-interacting protein 1

    See identical proteins and their annotated locations for NP_001102600.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473972
    UniProtKB/TrEMBL
    A0A8I5ZYF3, A6IYS4
    Related
    ENSRNOP00000025686.7, ENSRNOT00000025686.7
    Conserved Domains (1) summary
    pfam15739
    Location:101 → 204
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    50626846..50647848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601346.3 → XP_017456835.1  translin-associated factor X-interacting protein 1 isoform X7

  2. XM_006255527.5 → XP_006255589.1  translin-associated factor X-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZYF3
    Related
    ENSRNOP00000112312.1, ENSRNOT00000152533.1
    Conserved Domains (1) summary
    pfam15739
    Location:93 → 196
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  3. XM_006255529.5 → XP_006255591.1  translin-associated factor X-interacting protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I5ZYF3
    Conserved Domains (2) summary
    COG1196
    Location:48 → 316
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15739
    Location:54 → 157
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  4. XM_039097921.2 → XP_038953849.1  translin-associated factor X-interacting protein 1 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:129 → 397
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15739
    Location:135 → 238
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  5. XM_063278192.1 → XP_063134262.1  translin-associated factor X-interacting protein 1 isoform X5

  6. XM_063278193.1 → XP_063134263.1  translin-associated factor X-interacting protein 1 isoform X8

    UniProtKB/TrEMBL
    D3ZU07

  7. XM_039097925.2 → XP_038953853.1  translin-associated factor X-interacting protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8I5ZYF3, D3ZU07
    Conserved Domains (2) summary
    COG1196
    Location:42 → 310
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15739
    Location:48 → 151
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  8. XM_039097922.2 → XP_038953850.1  translin-associated factor X-interacting protein 1 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:110 → 378
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15739
    Location:116 → 219
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

  9. XM_017601344.3 → XP_017456833.1  translin-associated factor X-interacting protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZYF3, A0A8I6A9Q1
    Related
    ENSRNOP00000089205.1, ENSRNOT00000116830.2

  10. XM_039097926.2 → XP_038953854.1  translin-associated factor X-interacting protein 1 isoform X9

  11. XM_017601345.3 → XP_017456834.1  translin-associated factor X-interacting protein 1 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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