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Fam229a family with sequence similarity 229, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 500554, updated on 10-Jul-2024

Summary

Official Symbol
Fam229aprovided by RGD
Official Full Name
family with sequence similarity 229, member Aprovided by RGD
Primary source
RGD:1564163
See related
EnsemblRapid:ENSRNOG00000042787 AllianceGenome:RGD:1564163
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564163
Summary
Orthologous to human FAM229A (family with sequence similarity 229 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 249.7) and Spleen (RPKM 5.6) See more
Orthologs
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Genomic context

See Fam229a in Genome Data Viewer
Location:
5q36
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (147114054..147115043)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141829716..141830705)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147692391..147693380)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 8b Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 2 Neighboring gene BSD domain containing 1 Neighboring gene small nuclear ribonucleoprotein G pseudogene Neighboring gene testis-specific serine kinase 3 Neighboring gene MARCKS-like 1 Neighboring gene histone deacetylase 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109266.1NP_001102736.1  protein FAM229A

    See identical proteins and their annotated locations for NP_001102736.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473968
    UniProtKB/TrEMBL
    A6ISJ1, D4A5X2
    Related
    ENSRNOP00000059148.1, ENSRNOT00000064855.3
    Conserved Domains (1) summary
    pfam14982
    Location:60123
    UPF0731; UPF0731 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    147114054..147115043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)