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Sult1c2al1 sulfotransferase family 1C member 2A like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 501084, updated on 10-Jul-2024

Summary

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Official Symbol
Sult1c2al1provided by RGD
Official Full Name
sulfotransferase family 1C member 2A like 1provided by RGD
Primary source
RGD:1559960
See related
EnsemblRapid:ENSRNOG00000075356 AllianceGenome:RGD:1559960
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559960
Summary
Predicted to enable aryl sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 5280.4) See more
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Genomic context

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See Sult1c2al1 in Genome Data Viewer
Location:
9q11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (7488478..7529378, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (7161216..7203145, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (4866705..4879861, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene putative sperm motility kinase W Neighboring gene sulfotransferase family 1C member 2 Neighboring gene sulfotransferase family 1C member 3 Neighboring gene actin, alpha 1, skeletal muscle, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables aryl sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables aryl sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in sulfation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sulfation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to Sulfotransferase K1 (rSULT1C2)
Names
sulfotransferase 1C2
sulfotransferase 1C2A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402471.1 → NP_001389400.1  similar to Sulfotransferase K1 (rSULT1C2)

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A0A0G2JZU5, F1LNK1
    Related
    ENSRNOP00000105440.1, ENSRNOT00000133373.1

  2. NM_001428984.1 → NP_001415913.1  similar to Sulfotransferase K1 (rSULT1C2) isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A6KQA1

  3. NM_001428985.1 → NP_001415914.1  similar to Sulfotransferase K1 (rSULT1C2) isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A6KQA1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    7488478..7529378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084413.2 → XP_038940341.1  similar to Sulfotransferase K1 (rSULT1C2) isoform X1

    Conserved Domains (1) summary
    pfam00685
    Location:1 → 228
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_039084412.2 → XP_038940340.1  similar to Sulfotransferase K1 (rSULT1C2) isoform X1

    Conserved Domains (1) summary
    pfam00685
    Location:1 → 228
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein Strain
Heading Accession and Version

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