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zgc:112964 zgc:112964 [ Danio rerio (zebrafish) ]

Gene ID: 503764, updated on 2-Nov-2024

Summary

Official Symbol
zgc:112964provided by ZNC
Official Full Name
zgc:112964provided by ZNC
Primary source
ZFIN:ZDB-GENE-050306-47
See related
Ensembl:ENSDARG00000101200 AllianceGenome:ZFIN:ZDB-GENE-050306-47
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb93d07; wu:fb93d07; si:ch73-329n5.4
Summary
Predicted to act upstream of or within cell-matrix adhesion. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See zgc:112964 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (43669293..43685798, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (43922558..43939063, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene clarin 3 Neighboring gene forkhead box i1 Neighboring gene mucin-4-like Neighboring gene si:ch73-329n5.6

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC503764

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327869.1NP_001314798.1  uncharacterized protein LOC503764 precursor

    Status: VALIDATED

    Source sequence(s)
    AI722397, CU914622
    UniProtKB/TrEMBL
    A0A0R4IB81, A0A8M1P350
    Related
    ENSDARP00000132074.1, ENSDART00000170723.2
    Conserved Domains (1) summary
    cl02648
    Location:104241
    NIDO; Nidogen-like

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    43669293..43685798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013342.1: Suppressed sequence

    Description
    NM_001013342.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.