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SPCFV_gp1 RNA dependent RNA polymerase [ Sweet potato chlorotic fleck virus ]

Gene ID: 5076280, updated on 18-Aug-2023

Summary

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Gene symbol
SPCFV_gp1
Gene description
RNA dependent RNA polymerase
Locus tag
SPCFV_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sweet potato chlorotic fleck virus (acronym: SPCFV)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus
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Genomic context

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Sequence:
NC_006550.1 (63..6335)

NC_006550.1Genomic Context describing neighboring genes Neighboring gene triple gene block protein 1 Neighboring gene triple gene block protein 2 Neighboring gene triple gene block protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006550.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence analysis of the entire RNA genome of a sweet potato chlorotic fleck virus isolate reveals that it belongs to a distinct carlavirus species. Aritua V, et al. Arch Virol, 2007. PMID 17187295

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
RNA dependent RNA polymerase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006550.1 Reference assembly

    Range
    63..6335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_164258.1 RNA dependent RNA polymerase [Sweet potato chlorotic fleck virus]

    See identical proteins and their annotated locations for YP_164258.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2U9AEM7, Q5L4G0
    Conserved Domains (5) summary
    pfam00978
    Location:1694 → 2002
    RdRP_2; RNA dependent RNA polymerase
    pfam01660
    Location:43 → 369
    Vmethyltransf; Viral methyltransferase
    pfam05379
    Location:1082 → 1167
    Peptidase_C23; Carlavirus endopeptidase
    pfam13401
    Location:1282 → 1408
    AAA_22; AAA domain
    cl21496
    Location:755 → 882
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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