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EAPV_gp1 polyprotein [ East Asian Passiflora virus ]

Gene ID: 5076677, updated on 18-Aug-2023

Summary

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Gene symbol
EAPV_gp1
Gene description
polyprotein
Locus tag
EAPV_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
East Asian Passiflora virus (strain: AO, isolate: AO)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
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Genomic context

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Sequence:
NC_007728.1 (129..9791)

NC_007728.1Genomic Context describing neighboring genes Neighboring gene PIPO

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007728.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete nucleotide sequence of the genomic RNA of an Amami-O-shima strain of East Asian Passiflora potyvirus. Iwai H, et al. Arch Virol, 2006 Jul. PMID 16718357

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
P1 protein
HC-pro protein
P3 protein
6K1 protein
CI proein
6K2 protein
NIa-VPg protein
NIa-Pro protein
NIb protein
coat protein
YP_459919.1
  • coding P1, HC, P3, 6K1, CI, 6K2, NIa-VPg, NIa-Pro, NIb and CP
    pre-cursor of mature proteins

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007728.1 Reference assembly

    Range
    129..9791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_459919.1 polyprotein [East Asian Passiflora virus]

    See identical proteins and their annotated locations for YP_459919.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A292G4Q5, I7GY31, I7HAU9, I7HD34, Q2MH09
    Conserved Domains (10) summary
    smart00487
    Location:1372 → 1512
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:1372 → 1497
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam01577
    Location:198 → 435
    Peptidase_S30; Potyvirus P1 protease
    pfam00271
    Location:1541 → 1649
    Helicase_C; Helicase conserved C-terminal domain
    pfam00767
    Location:2986 → 3217
    Poty_coat; Potyvirus coat protein
    pfam00851
    Location:461 → 892
    Peptidase_C6; Helper component proteinase
    pfam00863
    Location:2168 → 2400
    Peptidase_C4; Peptidase family C4
    pfam08440
    Location:1676 → 1948
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:905 → 1342
    Potyvirid-P3; Protein P3 of Potyviral polyprotein
    cl02808
    Location:2438 → 2899
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  2. YP_006395352.1 P1 protein

    Conserved Domains (1) summary
    pfam01577
    Location:198 → 435
    Peptidase_S30; Potyvirus P1 protease

  3. YP_006395353.1 HC-pro protein

    Conserved Domains (1) summary
    pfam00851
    Location:26 → 457
    Peptidase_C6; Helper component proteinase

  4. YP_006395354.1 P3 protein

    Conserved Domains (1) summary
    pfam13608
    Location:13 → 273
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  5. YP_006395355.1 6K1 protein

    Conserved Domains (1) summary
    pfam13608
    Location:1 → 52
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  6. YP_006395356.1 CI proein

    Conserved Domains (5) summary
    smart00487
    Location:81 → 221
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:81 → 206
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:250 → 358
    Helicase_C; Helicase conserved C-terminal domain
    pfam08440
    Location:385 → 609
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:1 → 51
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  7. YP_006395357.1 6K2 protein

    Conserved Domains (1) summary
    pfam08440
    Location:1 → 23
    Poty_PP; Potyviridae polyprotein

  8. YP_006395358.1 NIa-VPg protein

  9. YP_006395359.1 NIa-Pro protein

    Conserved Domains (1) summary
    pfam00863
    Location:1 → 232
    Peptidase_C4; Peptidase family C4

  10. YP_006395360.1 NIb protein

    Conserved Domains (1) summary
    cl02808
    Location:27 → 488
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  11. YP_006395361.1 coat protein

    UniProtKB/TrEMBL
    I7GY28, I7GY29, I7H3T4, I7HAU4, I7HD32
    Conserved Domains (1) summary
    pfam00767
    Location:56 → 287
    Poty_coat; Potyvirus coat protein
Nucleotide Protein
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