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Speer1e spermatogenesis associated glutamate (E)-rich protein 1E [ Mus musculus (house mouse) ]

Gene ID: 545728, updated on 17-Aug-2024

Summary

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Official Symbol
Speer1eprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 1Eprovided by MGI
Primary source
MGI:MGI:3644254
See related
Ensembl:ENSMUSG00000095918 AllianceGenome:MGI:3644254
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5861; EG545728
Expression
Restricted expression toward testis adult (RPKM 47.7) See more
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Genomic context

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See Speer1e in Genome Data Viewer
Location:
5 A1; 5 3.82 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (11232982..11237777)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (11183015..11187810)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr5:11128022-11128323 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 1G Neighboring gene predicted gene, 32554 Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr5:11183344-11183645 Neighboring gene STARR-positive B cell enhancer mm9_chr5:11188710-11189011 Neighboring gene predicted gene 4047 Neighboring gene predicted gene, 29743 Neighboring gene predicted gene, 33093

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC545728

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310021.1 → NP_001296950.1  uncharacterized protein LOC545728

    Status: VALIDATED

    Source sequence(s)
    AC174780, BC030042
    UniProtKB/TrEMBL
    F6XVS9
    Related
    ENSMUSP00000132429.2, ENSMUST00000171093.8
    Conserved Domains (1) summary
    pfam04822
    Location:49 → 134
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    11232982..11237777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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