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fam8a1b family with sequence similarity 8 member A1b [ Danio rerio (zebrafish) ]

Gene ID: 548347, updated on 4-Jan-2025

Summary

Official Symbol
fam8a1bprovided by ZNC
Official Full Name
family with sequence similarity 8 member A1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050410-14
See related
Ensembl:ENSDARG00000004308 AllianceGenome:ZFIN:ZDB-GENE-050410-14
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fam8a1; fc56e03; wu:fc56e03; zgc:113480
Summary
Predicted to be located in membrane. Orthologous to human FAM8A1 (family with sequence similarity 8 member A1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See fam8a1b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25593339..25597869, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25678307..25682837, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene myosin regulatory light chain interacting protein b Neighboring gene uncharacterized LOC137487906 Neighboring gene ataxin 1b Neighboring gene zgc:110410 Neighboring gene zinc fingers and homeoboxes 2a Neighboring gene derlin 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC158543

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC548347
Names
family with sequence similarity 8, member A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017551.2NP_001017551.1  uncharacterized protein LOC548347

    See identical proteins and their annotated locations for NP_001017551.1

    Status: PREDICTED

    Source sequence(s)
    BC092164
    UniProtKB/TrEMBL
    Q56A52
    Related
    ENSDARP00000002079.8, ENSDART00000021533.9
    Conserved Domains (1) summary
    pfam06271
    Location:157316
    RDD; RDD family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    25593339..25597869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)