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zgc:113208 zgc:113208 [ Danio rerio (zebrafish) ]

Gene ID: 550591, updated on 12-Sep-2024

Summary

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Official Symbol
zgc:113208provided by ZNC
Official Full Name
zgc:113208provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-450
See related
Ensembl:ENSDARG00000035610 AllianceGenome:ZFIN:ZDB-GENE-050417-450
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb94c06; wu:fe14c09
Orthologs
all
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Genomic context

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See zgc:113208 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22605847..22621436, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (22102047..22117664, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene caspase 22, apoptosis-related cysteine peptidase Neighboring gene non-POU domain containing, octamer-binding Neighboring gene melatonin receptor 1C Neighboring gene vacuolar ATPase assembly factor VMA21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Rapid identification and isolation of zebrafish cDNA clones. Gong Z, et al. Gene, 1997 Nov 12. PMID 9409775
  2. Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development. Zhu Z, et al. Front Genet, 2020. PMID 32296464, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC550591

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017892.1 → NP_001017892.1  uncharacterized protein LOC550591

    See identical proteins and their annotated locations for NP_001017892.1

    Status: PREDICTED

    Source sequence(s)
    BC093435
    UniProtKB/TrEMBL
    A0A8M1N5U4, Q566N6
    Related
    ENSDARP00000051622.3, ENSDART00000051623.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    22605847..22621436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221174.1 → XP_068077275.1  uncharacterized protein LOC550591 isoform X1

  2. XM_068221175.1 → XP_068077276.1  uncharacterized protein LOC550591 isoform X2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394573.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    125964..141817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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