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itprid2 ITPR interacting domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 553255, updated on 2-Nov-2024

Summary

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Official Symbol
itprid2provided by ZNC
Official Full Name
ITPR interacting domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-090824-1
See related
Ensembl:ENSDARG00000038938 AllianceGenome:ZFIN:ZDB-GENE-090824-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ssfa2; si:dkey-165l22.3
Summary
Predicted to enable signaling receptor binding activity. Orthologous to human ITPRID2 (ITPR interacting domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See itprid2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (44304981..44420377)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (44503234..44618635)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene CERK like autophagy regulator Neighboring gene uncharacterized LOC110440049 Neighboring gene neuronal differentiation 1 Neighboring gene uncharacterized LOC101882689 Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 1C Neighboring gene phosphodiesterase 1A, calmodulin-dependent

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. CERKL knockdown causes retinal degeneration in zebrafish. Riera M, et al. PLoS One, 2013. PMID 23671706, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein ITPRID2
Names
sperm specific antigen 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    44304981..44420377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017357843.3 → XP_017213332.1  protein ITPRID2

    UniProtKB/TrEMBL
    A0A8M6Z880
    Related
    ENSDARP00000124900.1, ENSDART00000148826.2
    Conserved Domains (3) summary
    pfam14722
    Location:128 → 272
    KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
    pfam14723
    Location:920 → 1071
    SSFA2_C; Sperm-specific antigen 2 C-terminus
    cl25764
    Location:813 → 953
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_021479016.2 → XP_021334691.1  protein ITPRID2

    UniProtKB/TrEMBL
    A0A8M6Z880
    Conserved Domains (3) summary
    pfam14722
    Location:128 → 272
    KRAP_IP3R_bind; Ki-ras-induced actin-interacting protein-IP3R-interacting domain
    pfam14723
    Location:920 → 1071
    SSFA2_C; Sperm-specific antigen 2 C-terminus
    cl25764
    Location:813 → 953
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein Strain
Heading Accession and Version

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