U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zcchc8 zinc finger, CCHC domain containing 8 [ Danio rerio (zebrafish) ]

Gene ID: 553372, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
zcchc8provided by ZNC
Official Full Name
zinc finger, CCHC domain containing 8provided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-6
See related
Ensembl:ENSDARG00000034982 AllianceGenome:ZFIN:ZDB-GENE-060526-6
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-110p13.1
Summary
Predicted to enable RNA binding activity. Predicted to be involved in ncRNA processing. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human ZCCHC8 (zinc finger CCHC-type containing 8). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (67253889..67267717, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (66575520..66589364, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene cell division cycle associated 5 Neighboring gene CAP-GLY domain containing linker protein 1a Neighboring gene si:ch211-110p13.9 Neighboring gene uncharacterized LOC101885639 Neighboring gene arginine/serine-rich coiled-coil 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish. Musso G, et al. Development, 2014 Jan. PMID 24346703, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in RNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger CCHC domain-containing protein 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083818.1 → NP_001077287.1  zinc finger CCHC domain-containing protein 8

    See identical proteins and their annotated locations for NP_001077287.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134831
    UniProtKB/TrEMBL
    A4IFX9
    Related
    ENSDARP00000128424.4, ENSDART00000156795.4
    Conserved Domains (1) summary
    cl02643
    Location:267 → 317
    PSP; PSP

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    67253889..67267717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165627.4 → XP_005165684.1  zinc finger CCHC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BCZ9, A2BIQ8
    Related
    ENSDARP00000112279.2, ENSDART00000125781.4
    Conserved Domains (1) summary
    cl02643
    Location:267 → 317
    PSP; PSP
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools