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fbxo44.9 F-box protein 44, tandem duplicate 9 [ Danio rerio (zebrafish) ]

Gene ID: 553461, updated on 14-Nov-2024

Summary

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Official Symbol
fbxo44.9provided by ZNC
Official Full Name
F-box protein 44, tandem duplicate 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-061009-29
See related
Ensembl:ENSDARG00000071029 AllianceGenome:ZFIN:ZDB-GENE-061009-29
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-147f3.4
Summary
Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in ERAD pathway; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and glycoprotein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human FBXO44 (F-box protein 44). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See fbxo44.9 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (16928393..16953500)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (16962659..17026812)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene F-box protein 44, tandem duplicate 7 Neighboring gene F-box protein 44, tandem duplicate 8 Neighboring gene cell division cycle 42 like 2 Neighboring gene DNA (cytosine-5-)-methyltransferase beta, duplicate b.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC553461

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159639.1 → NP_001153111.1  uncharacterized protein LOC553461

    Status: PREDICTED

    Source sequence(s)
    CR356239
    UniProtKB/TrEMBL
    A0A8M1NSR5, F1RDW8
    Related
    ENSDARP00000075071.5, ENSDART00000080625.6
    Conserved Domains (2) summary
    pfam00646
    Location:49 → 94
    F-box; F-box domain
    pfam04300
    Location:114 → 287
    FBA; F-box associated region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    16928393..16953500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353561.3 → XP_017209050.1  uncharacterized protein LOC553461 isoform X1

    UniProtKB/TrEMBL
    A0A8M6YV88

  2. XM_017353562.3 → XP_017209051.1  uncharacterized protein LOC553461 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z3R2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395140.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    33384..42322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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