rab3ip RAB3A interacting protein (rabin3) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rab3ipprovided by ZNC
Official Full Name: RAB3A interacting protein (rabin3)provided by ZNC
Primary source: ZFIN:ZDB-GENE-050522-323
See related: Ensembl:ENSDARG00000101908 AllianceGenome:ZFIN:ZDB-GENE-050522-323
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:110270
Summary: Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within Kupffer's vesicle development and melanosome transport. Predicted to be active in Golgi to plasma membrane transport vesicle. Is expressed in several structures, including nervous system; otic vesicle; pectoral fin; solid lens vesicle; and trigeminal placode. Orthologous to human RAB3IP (RAB3A interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (72723717..72784907)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (71068603..71127426)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb76g09.y1 (e-PCR)
- UniSTS:191323

fk65e07.x1 (e-PCR)
- UniSTS:201373

fc66a09.y1 (e-PCR)
- UniSTS:194210

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables guanyl-nucleotide exchange factor activity	IBA Inferred from Biological aspect of Ancestor more info
enables guanyl-nucleotide exchange factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within Kupffer's vesicle development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within melanosome transport	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: rab-3A-interacting protein

Names: rabin8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.