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zgc:113162 zgc:113162 [ Danio rerio (zebrafish) ]

Gene ID: 553743, updated on 27-Dec-2024

Summary

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Official Symbol
zgc:113162provided by ZNC
Official Full Name
zgc:113162provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-530
See related
Ensembl:ENSDARG00000052923 AllianceGenome:ZFIN:ZDB-GENE-050522-530
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See zgc:113162 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (13383402..13432544)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (13288652..13335434)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein D3 polypeptide, like Neighboring gene calcium/calmodulin-dependent protein kinase kinase 2 Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor a Neighboring gene si:dkey-248f6.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC113162

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC553743

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020714.2 → NP_001018550.2  uncharacterized protein LOC553743

    Status: VALIDATED

    Source sequence(s)
    BX548161, CU694957
    UniProtKB/TrEMBL
    Q501U2
    Related
    ENSDARP00000122091.2, ENSDART00000134347.4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    13383402..13432544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215872.1 → XP_068071973.1  uncharacterized protein LOC553743 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P3B5, Q501U2

  2. XM_068215873.1 → XP_068071974.1  uncharacterized protein LOC553743 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P3B5, Q501U2
Nucleotide Protein Strain
Heading Accession and Version

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