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FAM88D family with sequence similarity 88 member D [ Homo sapiens (human) ]

Gene ID: 554249, updated on 10-Dec-2024

Summary

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Official Symbol
FAM88Dprovided by HGNC
Official Full Name
family with sequence similarity 88 member Dprovided by HGNC
Primary source
HGNC:HGNC:56160
See related
Ensembl:ENSG00000305205 AllianceGenome:HGNC:56160
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 4.8), kidney (RPKM 3.8) and 25 other tissues See more
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Genomic context

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See FAM88D in Genome Data Viewer
Location:
9p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (39873857..39875395)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (39887990..39889528)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (42018875..42020413)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:41926459-41927010 Neighboring gene CNTNAP3 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:41936783-41937617 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:41942506-41943030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:41943031-41943555 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28421 Neighboring gene glioblastoma down-regulated RNA Neighboring gene fibroblast growth factor 7 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:41997761-41998747 Neighboring gene uncharacterized LOC124900278 Neighboring gene RNA, 7SL, cytoplasmic 763, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126049.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR769767
    Related
    ENST00000809584.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    39873857..39875395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    39887990..39889528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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