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ifrd1 interferon-related developmental regulator 1 [ Danio rerio (zebrafish) ]

Gene ID: 555178, updated on 2-Nov-2024

Summary

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Official Symbol
ifrd1provided by ZNC
Official Full Name
interferon-related developmental regulator 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6132
See related
Ensembl:ENSDARG00000068708 AllianceGenome:ZFIN:ZDB-GENE-030131-6132
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7067566; wu:fi35f04; wu:fj67a06; zgc:154080; si:dkey-192l17.2
Summary
Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ifrd1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (6799801..6809278, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (6791231..6800708, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137491514 Neighboring gene transmembrane protein 168a Neighboring gene dedicator of cytokinesis 4b Neighboring gene uncharacterized LOC103910395

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors. Joris M, et al. Nucleic Acids Res, 2017 Sep 19. PMID 28934490, Free PMC Article
  2. A comparative map of the zebrafish genome. Woods IG, et al. Genome Res, 2000 Dec. PMID 11116086, Free PMC Article
  3. Effects of acetyl L-carnitine on zebrafish embryos: Phenotypic and gene expression studies. Gu Q, et al. J Appl Toxicol, 2021 Feb. PMID 32691447
  4. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC154080

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
interferon-related developmental regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076555.1 → NP_001070023.1  interferon-related developmental regulator 1

    See identical proteins and their annotated locations for NP_001070023.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124536
    UniProtKB/TrEMBL
    Q08BV7, Q1LUD0
    Related
    ENSDARP00000090241.3, ENSDART00000099467.4
    Conserved Domains (2) summary
    pfam04836
    Location:369 → 421
    IFRD_C; Interferon-related protein conserved region
    pfam05004
    Location:21 → 323
    IFRD; Interferon-related developmental regulator (IFRD)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    6799801..6809278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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