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rusf1 RUS family member 1 [ Danio rerio (zebrafish) ]

Gene ID: 555936, updated on 4-Jan-2025

Summary

Official Symbol
rusf1provided by ZNC
Official Full Name
RUS family member 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-070410-89
See related
Ensembl:ENSDARG00000059919 AllianceGenome:ZFIN:ZDB-GENE-070410-89
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:162613
Summary
Predicted to be located in membrane. Orthologous to human RUSF1 (RUS family member 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See rusf1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32862730..32870055)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32731017..32737519)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene CD2 (cytoplasmic tail) binding protein 2 Neighboring gene proline rich 14 Neighboring gene si:dkey-16l2.20 Neighboring gene zgc:113090 Neighboring gene K(lysine) acetyltransferase 7a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110453.2NP_001103923.2  RUS family member 1

    Status: VALIDATED

    Source sequence(s)
    BX571714
    UniProtKB/TrEMBL
    A3KNW8
    Related
    ENSDARP00000114281.1, ENSDART00000144939.3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32862730..32870055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217063.1XP_068073164.1  RUS family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBC2, A3KNW8, F1QF25
  2. XM_005164030.5XP_005164087.1  RUS family member 1 isoform X1

    See identical proteins and their annotated locations for XP_005164087.1

    UniProtKB/TrEMBL
    A0A8M2BBC2, A3KNW8, F1QF25
    Conserved Domains (1) summary
    pfam04884
    Location:43281
    DUF647; Vitamin B6 photo-protection and homoeostasis
  3. XM_005164032.5XP_005164089.1  RUS family member 1 isoform X1

    See identical proteins and their annotated locations for XP_005164089.1

    UniProtKB/TrEMBL
    A0A8M2BBC2, A3KNW8, F1QF25
    Conserved Domains (1) summary
    pfam04884
    Location:43281
    DUF647; Vitamin B6 photo-protection and homoeostasis
  4. XM_005164031.5XP_005164088.1  RUS family member 1 isoform X1

    See identical proteins and their annotated locations for XP_005164088.1

    UniProtKB/TrEMBL
    A0A8M2BBC2, A3KNW8, F1QF25
    Related
    ENSDARP00000104623.2, ENSDART00000125126.4
    Conserved Domains (1) summary
    pfam04884
    Location:43281
    DUF647; Vitamin B6 photo-protection and homoeostasis

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    343823..349762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    223063..228976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)