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proser1 proline and serine rich 1 [ Danio rerio (zebrafish) ]

Gene ID: 556416, updated on 2-Nov-2024

Summary

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Official Symbol
proser1provided by ZNC
Official Full Name
proline and serine rich 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-111003-1
See related
Ensembl:ENSDARG00000086302 AllianceGenome:ZFIN:ZDB-GENE-111003-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human PROSER1 (proline and serine rich 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See proser1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (24649684..24659822, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (24680234..24690572, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 46 member 3 Neighboring gene stomatin (EPB72)-like 3b Neighboring gene vacuolar protein sorting 36 homolog Neighboring gene thrombospondin type 1 domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
proline and serine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    24649684..24659822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005155281.5 → XP_005155338.1  proline and serine-rich protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8QF00, A0A8M2B1V5
    Related
    ENSDARP00000151539.1, ENSDART00000190684.1
    Conserved Domains (1) summary
    pfam14771
    Location:33 → 121
    DUF4476; Domain of unknown function (DUF4476)

  2. XM_679230.10 → XP_684322.3  proline and serine-rich protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8N7T6S0, E7FCT7
    Related
    ENSDARP00000106355.2, ENSDART00000128902.3
    Conserved Domains (1) summary
    pfam14771
    Location:33 → 121
    DUF4476; Domain of unknown function (DUF4476)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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