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si:ch211-69b7.6 si:ch211-69b7.6 [ Danio rerio (zebrafish) ]

Gene ID: 556640, updated on 14-Nov-2024

Summary

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Official Symbol
si:ch211-69b7.6provided by ZNC
Official Full Name
si:ch211-69b7.6provided by ZNC
Primary source
ZFIN:ZDB-GENE-141212-266
See related
AllianceGenome:ZFIN:ZDB-GENE-141212-266
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi27h03; wu:fi27h03
Summary
Predicted to be involved in regulation of RNA splicing. Predicted to be active in costamere and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch211-69b7.6 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (11895924..11909459, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (11907958..11926602, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 93 Neighboring gene uncharacterized LOC137490405 Neighboring gene WAS/WASL interacting protein family, member 2a Neighboring gene serine/threonine-protein kinase pim-2-like Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 10 Neighboring gene zgc:64002

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
neuroblast differentiation-associated protein AHNAK

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    11895924..11909459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_679489.9 → XP_684581.8  neuroblast differentiation-associated protein AHNAK

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394803.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    4547..18082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472394.2 → XP_021328069.1  neuroblast differentiation-associated protein AHNAK

    UniProtKB/TrEMBL
    A0A8M9PFE1
    Conserved Domains (1) summary
    pfam13349
    Location:405 → 562
    DUF4097; Putative adhesin

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395295.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    4547..18082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474227.2 → XP_021329902.1  neuroblast differentiation-associated protein AHNAK

    UniProtKB/TrEMBL
    A0A8M9PFE1
    Conserved Domains (1) summary
    pfam13349
    Location:405 → 562
    DUF4097; Putative adhesin
Nucleotide Protein Strain
Heading Accession and Version

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