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FOXJ2 forkhead box J2 [ Homo sapiens (human) ]

Gene ID: 55810, updated on 2-Nov-2024

Summary

Official Symbol
FOXJ2provided by HGNC
Official Full Name
forkhead box J2provided by HGNC
Primary source
HGNC:HGNC:24818
See related
Ensembl:ENSG00000065970 MIM:619162; AllianceGenome:HGNC:24818
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FHX
Summary
Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Involved in several processes, including negative regulation of angiogenesis; negative regulation of blood vessel endothelial cell differentiation; and positive regulation of vascular associated smooth muscle cell proliferation. Located in fibrillar center and nucleoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in endometrium (RPKM 8.4), ovary (RPKM 8.2) and 25 other tissues See more
Orthologs
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Genomic context

See FOXJ2 in Genome Data Viewer
Location:
12p13.31
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (8032716..8055517)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (8046312..8069122)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (8185312..8208113)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4206 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5926 Neighboring gene complement C3a receptor 1 Neighboring gene NANOG hESC enhancer GRCh37_chr12:8229725-8230226 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:8234132-8235331 Neighboring gene NECAP endocytosis associated 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of forkhead box J2 (FOXJ2) by siRNA inhibits the early stages of HIV-1 replication in 293T cells infected with VSV-G pseudotyped HIV-1 PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in chromatin ISA
Inferred from Sequence Alignment
more info
 
located_in fibrillar center IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IC
Inferred by Curator
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
forkhead box protein J2
Names
FOXJ2 forkhead factor
fork head homologous X

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018416.3NP_060886.1  forkhead box protein J2

    See identical proteins and their annotated locations for NP_060886.1

    Status: VALIDATED

    Source sequence(s)
    AC006511, AF155132, AL161978, BC032608, CB243304
    Consensus CDS
    CCDS8587.1
    UniProtKB/Swiss-Prot
    A0AVK4, B2RMP3, Q96PS9, Q9NSN5, Q9P0K8
    Related
    ENSP00000162391.3, ENST00000162391.8
    Conserved Domains (1) summary
    pfam00250
    Location:66143
    Forkhead; Forkhead domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    8032716..8055517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011520761.3XP_011519063.1  forkhead box protein J2 isoform X1

    See identical proteins and their annotated locations for XP_011519063.1

    Conserved Domains (1) summary
    pfam00250
    Location:66143
    Forkhead; Forkhead domain
  2. XM_047429152.1XP_047285108.1  forkhead box protein J2 isoform X2

    UniProtKB/Swiss-Prot
    A0AVK4, B2RMP3, Q96PS9, Q9NSN5, Q9P0K8
  3. XM_011520760.3XP_011519062.1  forkhead box protein J2 isoform X1

    See identical proteins and their annotated locations for XP_011519062.1

    Conserved Domains (1) summary
    pfam00250
    Location:66143
    Forkhead; Forkhead domain
  4. XM_017019640.2XP_016875129.1  forkhead box protein J2 isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    8046312..8069122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054372555.1XP_054228530.1  forkhead box protein J2 isoform X1

  2. XM_054372556.1XP_054228531.1  forkhead box protein J2 isoform X2

    UniProtKB/Swiss-Prot
    A0AVK4, B2RMP3, Q96PS9, Q9NSN5, Q9P0K8
  3. XM_054372554.1XP_054228529.1  forkhead box protein J2 isoform X1

  4. XM_054372557.1XP_054228532.1  forkhead box protein J2 isoform X3