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urm1 ubiquitin related modifier 1 [ Danio rerio (zebrafish) ]

Gene ID: 558120, updated on 2-Nov-2024

Summary

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Official Symbol
urm1provided by ZNC
Official Full Name
ubiquitin related modifier 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-300
See related
Ensembl:ENSDARG00000091198 AllianceGenome:ZFIN:ZDB-GENE-091204-300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkeyp-68f6.2
Summary
Predicted to enable protein tag activity. Predicted to be involved in protein urmylation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human URM1 (ubiquitin related modifier 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See urm1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (10313024..10326027)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (10354786..10367789)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884772 Neighboring gene uncharacterized LOC108191535 Neighboring gene microRNA 219-1 Neighboring gene cerebral endothelial cell adhesion molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Systems Biology Approach to the Coordination of Defensive and Offensive Molecular Mechanisms in the Innate and Adaptive Host-Pathogen Interaction Networks. Wu CC, et al. PLoS One, 2016. PMID 26881892, Free PMC Article
  2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables protein tag activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein urmylation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA thio-modification IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA thio-modification IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-related modifier 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328092.1 → NP_001315021.1  ubiquitin-related modifier 1

    Status: VALIDATED

    Source sequence(s)
    BX323065
    UniProtKB/TrEMBL
    A0A8M1P9X0, F2Z4T6
    Related
    ENSDARP00000120675.1, ENSDART00000142895.3
    Conserved Domains (1) summary
    pfam09138
    Location:9 → 101
    Urm1; Urm1 (Ubiquitin related modifier)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    10313024..10326027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479180.2 → XP_021334855.1  ubiquitin-related modifier 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QKQ6
    Related
    ENSDARP00000108653.2, ENSDART00000129952.3
    Conserved Domains (1) summary
    pfam09138
    Location:9 → 100
    Urm1; Urm1 (Ubiquitin related modifier)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394772.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    41354..54357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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