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si:ch211-86h15.1 si:ch211-86h15.1 [ Danio rerio (zebrafish) ]

Gene ID: 558435, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch211-86h15.1provided by ZNC
Official Full Name
si:ch211-86h15.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081107-38
See related
Ensembl:ENSDARG00000074098 AllianceGenome:ZFIN:ZDB-GENE-081107-38
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch211-86h15.1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (22623283..22635935)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (22462607..22505512)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene PTPRF interacting protein alpha 4 Neighboring gene myogenin Neighboring gene leucine rich repeat neuronal 2 Neighboring gene MDM4 regulator of p53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Rapid identification and isolation of zebrafish cDNA clones. Gong Z, et al. Gene, 1997 Nov 12. PMID 9409775
  2. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC558435

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128241.1 → NP_001121713.1  uncharacterized protein LOC558435

    Status: VALIDATED

    Source sequence(s)
    BX537143, CT573184
    UniProtKB/TrEMBL
    A0A8M1NH34, B0S6I4, E7FGM6
    Related
    ENSDARP00000100670.3, ENSDART00000111850.5
    Conserved Domains (1) summary
    PLN02967
    Location:272 → 400
    PLN02967; kinase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    22623283..22635935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172878.5 → XP_005172935.1  uncharacterized protein LOC558435 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BK24
    Conserved Domains (4) summary
    COG5048
    Location:377 → 425
    COG5048; FOG: Zn-finger [General function prediction only]
    TIGR02794
    Location:227 → 322
    tolA_full; TolA protein
    sd00017
    Location:353 → 373
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:366 → 390
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005172879.5 → XP_005172936.1  uncharacterized protein LOC558435 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BKN5
    Conserved Domains (3) summary
    COG5048
    Location:338 → 386
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:314 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:327 → 351
    zf-H2C2_2; Zinc-finger double domain

  3. XM_005172881.5 → XP_005172938.1  uncharacterized protein LOC558435 isoform X4

    UniProtKB/TrEMBL
    A0A8M2BK52

  4. XM_005172880.5 → XP_005172937.1  uncharacterized protein LOC558435 isoform X3

    UniProtKB/TrEMBL
    A0A8M2BK59
Nucleotide Protein
Heading Accession and Version

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