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si:dkey-73n10.1 si:dkey-73n10.1 [ Danio rerio (zebrafish) ]

Gene ID: 558609, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-73n10.1provided by ZNC
Official Full Name
si:dkey-73n10.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9311
See related
Ensembl:ENSDARG00000069168 AllianceGenome:ZFIN:ZDB-GENE-030131-9311
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj65a11; wu:fj65a11
Summary
Orthologous to human C15orf39 (chromosome 15 open reading frame 39). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:dkey-73n10.1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (18931484..18942110, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (18942294..18953073, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438119 Neighboring gene ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Neighboring gene phosphopantothenoylcysteine decarboxylase Neighboring gene 3-hydroxyacyl-CoA dehydratase 3 Neighboring gene integrator complex subunit 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
si:dkey-73n10.1; uncharacterized protein C15orf39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    18931484..18942110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467796.2 → XP_021323471.1  uncharacterized protein C15orf39 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M9PMH8, F1QGJ6
    Related
    ENSDARP00000091231.4, ENSDART00000100458.5

  2. XM_021467795.2 → XP_021323470.1  uncharacterized protein C15orf39 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8M9PQR5

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395020.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    213453..223787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159151.5 → XP_005159208.2  uncharacterized protein C15orf39 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M2B623

  2. XM_021473272.2 → XP_021328947.1  uncharacterized protein C15orf39 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8M9PD12
Nucleotide Protein
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