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snap91b synaptosome associated protein 91b [ Danio rerio (zebrafish) ]

Gene ID: 559029, updated on 14-Nov-2024

Summary

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Official Symbol
snap91bprovided by ZNC
Official Full Name
synaptosome associated protein 91bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-81
See related
AllianceGenome:ZFIN:ZDB-GENE-041210-81
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-214j24.6; si:ch211-214j24.8; si:ch211-214j24.9
Summary
Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane. Orthologous to human SNAP91 (synaptosome associated protein 91). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See snap91b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5260255..5285076, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5251685..5294340, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:ch211-214j24.14 Neighboring gene coiled-coil domain containing 167 Neighboring gene uncharacterized LOC137491504 Neighboring gene clathrin coat assembly protein AP180 Neighboring gene clathrin coat assembly protein AP180-like Neighboring gene si:ch211-214j24.15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Thyme SB, et al. Cell, 2019 Apr 4. PMID 30929901, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
clathrin coat assembly protein AP180; uncharacterized protein LOC559029
Names
synaptosomal-associated protein 91b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    5260255..5285076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068220724.1 → XP_068076825.1  clathrin coat assembly protein AP180 isoform X1

  2. XM_068220727.1 → XP_068076828.1  clathrin coat assembly protein AP180 isoform X4

  3. XM_068220725.1 → XP_068076826.1  clathrin coat assembly protein AP180 isoform X2

  4. XM_009300022.4 → XP_009298297.2  clathrin coat assembly protein AP180 isoform X1

  5. XM_682327.10 → XP_687419.6  clathrin coat assembly protein AP180 isoform X6

  6. XM_068220730.1 → XP_068076831.1  clathrin coat assembly protein AP180 isoform X7

  7. XM_068220729.1 → XP_068076830.1  clathrin coat assembly protein AP180 isoform X6

  8. XM_068220728.1 → XP_068076829.1  clathrin coat assembly protein AP180 isoform X5

  9. XM_068220726.1 → XP_068076827.1  clathrin coat assembly protein AP180 isoform X3

Nucleotide Protein Strain
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