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cfap210 cilia and flagella associated protein 210 [ Danio rerio (zebrafish) ]

Gene ID: 559457, updated on 2-Nov-2024

Summary

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Official Symbol
cfap210provided by ZNC
Official Full Name
cilia and flagella associated protein 210provided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-457
See related
Ensembl:ENSDARG00000077928 AllianceGenome:ZFIN:ZDB-GENE-081104-457
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ccdc173; si:dkeyp-13f6.4
Summary
Predicted to be active in axonemal microtubule. Orthologous to human CFAP210 (cilia and flagella associated protein 210). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See cfap210 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (48219150..48231020)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (48521741..48533625)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 23 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene phosphoglycerate dehydrogenase Neighboring gene FAST kinase domains 1 Neighboring gene kelch-like family member 41a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Structure, evolution and expression of collagen XXVIII: Lessons from the zebrafish. Gebauer JM, et al. Matrix Biol, 2016 Jan. PMID 26235539
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 173; cilia- and flagella- associated protein 210
Names
coiled-coil domain containing 173

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    48219150..48231020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479038.2 → XP_021334713.1  cilia- and flagella- associated protein 210 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q5A4
    Conserved Domains (1) summary
    pfam13868
    Location:117 → 446
    TPH; Trichohyalin-plectin-homology domain

  2. XM_002663426.4 → XP_002663472.1  cilia- and flagella- associated protein 210 isoform X1

    UniProtKB/TrEMBL
    A0A8M1RM28, E7F133
    Related
    ENSDARP00000102848.2, ENSDART00000111225.5
    Conserved Domains (2) summary
    pfam13868
    Location:139 → 481
    TPH; Trichohyalin-plectin-homology domain
    pfam14235
    Location:187 → 251
    DUF4337; Domain of unknown function (DUF4337)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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