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plxdc2a plexin domain containing 2a [ Danio rerio (zebrafish) ]

Gene ID: 559852, updated on 4-Jan-2025

Summary

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Official Symbol
plxdc2aprovided by ZNC
Official Full Name
plexin domain containing 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-16
See related
Ensembl:ENSDARG00000077219 AllianceGenome:ZFIN:ZDB-GENE-070705-16
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb39a09; wu:fb39a09; si:ch211-106h4.6
Summary
Predicted to be located in membrane. Orthologous to human PLXDC2 (plexin domain containing 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See plxdc2a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (31614554..31625726)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (31631139..31641974)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene si:ch211-106h4.4 Neighboring gene uncharacterized LOC110438058 Neighboring gene si:ch211-106h4.5 Neighboring gene myosin VIIA and Rab interacting protein a Neighboring gene si:ch211-106h4.12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
plexin domain containing 2a; plexin domain-containing protein 2
Names
plexin domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    31614554..31625726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_683240.8 → XP_688332.3  plexin domain-containing protein 2

    UniProtKB/TrEMBL
    A0A8N7T5Q5, F1R5J7
    Related
    ENSDARP00000104146.3, ENSDART00000111038.4
    Conserved Domains (2) summary
    smart00423
    Location:322 → 365
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl02648
    Location:218 → 257
    NIDO; Nidogen-like
Nucleotide Protein
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