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TMEM234 transmembrane protein 234 [ Homo sapiens (human) ]

Gene ID: 56063, updated on 2-Nov-2024

Summary

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Official Symbol
TMEM234provided by HGNC
Official Full Name
transmembrane protein 234provided by HGNC
Primary source
HGNC:HGNC:28837
See related
Ensembl:ENSG00000160055 MIM:620289; AllianceGenome:HGNC:28837
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AASL548; C1orf91; PRO1105; RP4-622L5; dJ622L5.7
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis (RPKM 5.0), thyroid (RPKM 3.6) and 25 other tissues See more
Orthologs
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Genomic context

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See TMEM234 in Genome Data Viewer
Location:
1p35.2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (32214477..32222353, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (32072380..32080257, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (32680078..32687954, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene taxilin alpha Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:32664855-32665413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:32665414-32665971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 672 Neighboring gene coiled-coil domain containing 28B Neighboring gene H3K4me1 hESC enhancers GRCh37_chr1:32666522-32667041 and GRCh37_chr1:32667042-32667562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:32670259-32670760 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 675 Neighboring gene IQ motif containing C Neighboring gene doublecortin domain containing 2B Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:32681346-32682545 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:32687227-32688426 Neighboring gene eukaryotic translation initiation factor 3 subunit I Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:32698370-32698870 Neighboring gene myotubularin related protein 9 like, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 676 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 678 Neighboring gene family with sequence similarity 167 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Knockdown of Tmem234 in zebrafish results in proteinuria. Rodriguez PQ, et al. Am J Physiol Renal Physiol, 2015 Dec 1. PMID 26377798
  2. Systematic identification of pathological lamin A interactors. Dittmer TA, et al. Mol Biol Cell, 2014 May. PMID 24623722, Free PMC Article
  3. Systematic protein-protein interaction mapping for clinically relevant human GPCRs. Sokolina K, et al. Mol Syst Biol, 2017 Mar 15. PMID 28298427, Free PMC Article
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Clark HF, et al. Genome Res, 2003 Oct. PMID 12975309, Free PMC Article
  5. Next-generation sequencing to generate interactome datasets. Yu H, et al. Nat Methods, 2011 Jun. PMID 21516116, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ90779

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 234

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001366191.2 → NP_001353120.1  transmembrane protein 234 isoform b precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) encodes the longer isoform (b).
    Source sequence(s)
    AL049795
    Consensus CDS
    CCDS90906.1
    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76
    Related
    ENSP00000344021.3, ENST00000344461.7
    Conserved Domains (1) summary
    pfam10639
    Location:18 → 126
    TMEM234; Putative transmembrane family 234

  2. NM_019118.5 → NP_061991.3  transmembrane protein 234 isoform a precursor

    See identical proteins and their annotated locations for NP_061991.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform a.
    Source sequence(s)
    AK295232, BC004885
    Consensus CDS
    CCDS356.2
    UniProtKB/Swiss-Prot
    Q8WY98
    UniProtKB/TrEMBL
    B4DHR3
    Related
    ENSP00000309792.6, ENST00000309777.11
    Conserved Domains (1) summary
    pfam10639
    Location:18 → 126
    TMEM234; Putative transmembrane family 234

RNA

  1. NR_133634.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK295232, BC004885, BP307734

  2. NR_133635.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains several additional exons at the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK295232, BC038842

  3. NR_133636.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an alternate internal exon and several additional exons at the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK295232, BC001256
    Related
    ENST00000491434.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    32214477..32222353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001816.2 → XP_016857305.1  transmembrane protein 234 isoform X1

    Conserved Domains (1) summary
    pfam10639
    Location:18 → 126
    TMEM234; Putative transmembrane family 234

  2. XM_047425479.1 → XP_047281435.1  transmembrane protein 234 isoform X2

    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76
    Related
    ENSP00000433020.1, ENST00000461402.5

  3. XM_047425483.1 → XP_047281439.1  transmembrane protein 234 isoform X2

    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76

  4. XM_047425485.1 → XP_047281441.1  transmembrane protein 234 isoform X2

    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76

  5. XM_047425493.1 → XP_047281449.1  transmembrane protein 234 isoform X3

    UniProtKB/TrEMBL
    B4DHR3

  6. XM_017001825.2 → XP_016857314.1  transmembrane protein 234 isoform X3

    UniProtKB/TrEMBL
    B4DHR3
    Conserved Domains (1) summary
    pfam10639
    Location:18 → 116
    TMEM234; Putative transmembrane family 234

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    32072380..32080257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054337720.1 → XP_054193695.1  transmembrane protein 234 isoform X1

  2. XM_054337726.1 → XP_054193701.1  transmembrane protein 234 isoform X5

  3. XM_054337721.1 → XP_054193696.1  transmembrane protein 234 isoform X2

    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76

  4. XM_054337722.1 → XP_054193697.1  transmembrane protein 234 isoform X2

    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76

  5. XM_054337719.1 → XP_054193694.1  transmembrane protein 234 isoform X4

  6. XM_054337718.1 → XP_054193693.1  transmembrane protein 234 isoform X4

  7. XM_054337723.1 → XP_054193698.1  transmembrane protein 234 isoform X2

    UniProtKB/Swiss-Prot
    B2R535, D3DPP7, Q6UWY9, Q8N2H6, Q8WY98, Q9BSR2, Q9NU76

  8. XM_054337724.1 → XP_054193699.1  transmembrane protein 234 isoform X3

    UniProtKB/TrEMBL
    B4DHR3

  9. XM_054337725.1 → XP_054193700.1  transmembrane protein 234 isoform X3

    UniProtKB/TrEMBL
    B4DHR3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8WY98.1 GenPept UniProtKB/Swiss-Prot:Q8WY98

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