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LOC560947 uncharacterized LOC560947 [ Danio rerio (zebrafish) ]

Gene ID: 560947, updated on 27-Mar-2024

Summary

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Gene symbol
LOC560947
Gene description
uncharacterized LOC560947
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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Location:
chromosome: 24
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (7551863..7557851)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (7522614..7528531)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 2 Neighboring gene lysine (K)-specific methyltransferase 2Ca Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Neighboring gene ATPase H+ transporting V0 subunit a1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
adenylate cyclase, terminal-differentiation specific; putative mediator of RNA polymerase II transcription subunit 26; uncharacterized protein si:ch211-271e10.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    7551863..7557851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470269.1 → XP_021325944.1  uncharacterized protein si:ch211-271e10.1 isoform X5

    UniProtKB/TrEMBL
    A0A8M9PM51
    Conserved Domains (1) summary
    cl26247
    Location:15 → 213
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  2. XM_009297277.3 → XP_009295552.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X6

    UniProtKB/TrEMBL
    A0A8M3AVW7
    Conserved Domains (1) summary
    TIGR03835
    Location:45 → 288
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  3. XM_005162551.4 → XP_005162608.1  adenylate cyclase, terminal-differentiation specific isoform X4

    UniProtKB/TrEMBL
    A0A8M2B9E9
    Conserved Domains (1) summary
    TIGR03835
    Location:45 → 288
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  4. XM_005162550.4 → XP_005162607.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X3

    UniProtKB/TrEMBL
    A0A8M2B9K5
    Conserved Domains (1) summary
    TIGR03835
    Location:45 → 288
    termin_org_DnaJ; terminal organelle assembly protein TopJ

  5. XM_009297272.3 → XP_009295547.1  adenylate cyclase, terminal-differentiation specific isoform X1

    UniProtKB/TrEMBL
    A0A8M3B6J4
    Conserved Domains (1) summary
    PRK14950
    Location:15 → 213
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional

  6. XM_009297273.3 → XP_009295548.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AP38
    Conserved Domains (1) summary
    PRK14950
    Location:15 → 213
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
Nucleotide Protein
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