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hrob homologous recombination factor with OB-fold [ Danio rerio (zebrafish) ]

Gene ID: 561004, updated on 4-Jan-2025

Summary

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Official Symbol
hrobprovided by ZNC
Official Full Name
homologous recombination factor with OB-foldprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5375
See related
Ensembl:ENSDARG00000096229 AllianceGenome:ZFIN:ZDB-GENE-030131-5375
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd15b08; wu:fd15b08; si:dkey-260c8.8
Summary
Predicted to act upstream of or within recombinational repair. Orthologous to human HROB (homologous recombination factor with OB-fold). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See hrob in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37790403..37806287)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37648387..37664429)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene ribosomal protein S11 Neighboring gene acid-sensing (proton-gated) ion channel 2 Neighboring gene uncharacterized LOC110439297 Neighboring gene uncharacterized LOC137490685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within recombinational repair IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
homologous recombination OB-fold protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    37790403..37806287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_684402.8 → XP_689494.2  homologous recombination OB-fold protein isoform X1

    UniProtKB/TrEMBL
    A0A8N7TDQ9, I3ISZ9
    Related
    ENSDARP00000126050.1, ENSDART00000151506.2
    Conserved Domains (1) summary
    pfam15072
    Location:414 → 497
    DUF4539; Domain of unknown function (DUF4539)

  2. XM_068219277.1 → XP_068075378.1  homologous recombination OB-fold protein isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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