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LOC561325 thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 561325, updated on 12-Sep-2024

Summary

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Gene symbol
LOC561325
Gene description
thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1
See related
Ensembl:ENSDARG00000101063
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC561325 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (4533244..4547923)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (4092351..4107030)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene zgc:153704 Neighboring gene cystatin 14b, tandem duplicate 1 Neighboring gene cystatin-A-like Neighboring gene cystatin 14b, tandem duplicate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1
NP_001313378.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326449.1 → NP_001313378.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    BC159243, CABZ01058650
    UniProtKB/TrEMBL
    A0A0G2KNS1, A0A8M1P2N7
    Related
    ENSDARP00000134022.1, ENSDART00000158826.2
    Conserved Domains (1) summary
    cl00125
    Location:49 → 154
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    4533244..4547923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials