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LOC562466 cyclic nucleotide-gated cation channel beta-3-like [ Danio rerio (zebrafish) ]

Gene ID: 562466, updated on 27-Mar-2024

Summary

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Gene symbol
LOC562466
Gene description
cyclic nucleotide-gated cation channel beta-3-like
See related
Ensembl:ENSDARG00000101368
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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Location:
chromosome: 24
Exon count:
19
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (31428987..31457529, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (31491694..31520344, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene copine III Neighboring gene cyclic nucleotide gated channel subunit beta 3, tandem duplicate 1 Neighboring gene cyclic nucleotide binding domain containing 1 Neighboring gene matrix metallopeptidase 16a (membrane-inserted)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cyclic nucleotide-gated cation channel beta-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    31428987..31457529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009297557.3 → XP_009295832.2  cyclic nucleotide-gated cation channel beta-3-like isoform X2

    UniProtKB/TrEMBL
    A0A8M3ANQ6
    Related
    ENSDARP00000152721.1, ENSDART00000185128.1

  2. XM_009297556.3 → XP_009295831.2  cyclic nucleotide-gated cation channel beta-3-like isoform X1

    UniProtKB/TrEMBL
    A0A8M3AW53

  3. XM_009297558.3 → XP_009295833.2  cyclic nucleotide-gated cation channel beta-3-like isoform X3

    UniProtKB/TrEMBL
    A0A8M3B6T2

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395182.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    251894..262881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473810.1 → XP_021329485.1  cyclic nucleotide-gated cation channel beta-3-like isoform X4

    UniProtKB/TrEMBL
    A0A8M9Q890
    Conserved Domains (2) summary
    cd00038
    Location:191 → 302
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    cl26073
    Location:16 → 274
    Ank_2; Ankyrin repeats (3 copies)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395367.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    258668..269710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474560.1 → XP_021330235.1  cyclic nucleotide-gated cation channel beta-3-like isoform X5

    UniProtKB/TrEMBL
    A0A8M9QA70
    Conserved Domains (2) summary
    cd00038
    Location:191 → 308
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    cl26073
    Location:16 → 274
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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