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borcs6 BLOC-1 related complex subunit 6 [ Danio rerio (zebrafish) ]

Gene ID: 562545, updated on 2-Nov-2024

Summary

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Official Symbol
borcs6provided by ZNC
Official Full Name
BLOC-1 related complex subunit 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-060531-151
See related
Ensembl:ENSDARG00000061023 AllianceGenome:ZFIN:ZDB-GENE-060531-151
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-72l14.4
Summary
Predicted to be involved in lysosome localization. Predicted to be part of BORC complex. Orthologous to human BORCS6 (BLOC-1 related complex subunit 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See borcs6 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (25959926..25971560)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25940763..25952421)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene ras homolog gene family, member Ab Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H Neighboring gene si:dkey-72l14.3 Neighboring gene microRNA 135b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in lysosome localization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of BORC complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BLOC-1-related complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044988.1 → NP_001038453.1  BLOC-1-related complex subunit 6

    See identical proteins and their annotated locations for NP_001038453.1

    Status: PROVISIONAL

    Source sequence(s)
    BX784025
    UniProtKB/TrEMBL
    A0A8N7UY96, Q1LVE2
    Related
    ENSDARP00000122695.1, ENSDART00000140626.3
    Conserved Domains (1) summary
    pfam10157
    Location:285 → 433
    DUF2365; Uncharacterized conserved protein (DUF2365)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    25959926..25971560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167044.4 → XP_005167101.1  BLOC-1-related complex subunit 6 isoform X1

    See identical proteins and their annotated locations for XP_005167101.1

    UniProtKB/TrEMBL
    A0A8N7UY96, Q1LVE2
    Related
    ENSDARP00000116829.1, ENSDART00000143011.3
    Conserved Domains (1) summary
    pfam10157
    Location:285 → 433
    DUF2365; Uncharacterized conserved protein (DUF2365)

RNA

  1. XR_011016487.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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