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lap3 leucine aminopeptidase 3 [ Danio rerio (zebrafish) ]

Gene ID: 562854, updated on 2-Nov-2024

Summary

Official Symbol
lap3provided by ZNC
Official Full Name
leucine aminopeptidase 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060719-1
See related
Ensembl:ENSDARG00000061981 AllianceGenome:ZFIN:ZDB-GENE-060719-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7150907
Summary
Predicted to enable peptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and musculature system. Orthologous to human LAP3 (leucine aminopeptidase 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See lap3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (19418380..19431510, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (18725443..18738573, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene tyrosinase-related protein 1b Neighboring gene RNA binding motif protein 47 Neighboring gene clock circadian regulator b Neighboring gene KIT proto-oncogene, receptor tyrosine kinase b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables aminopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metalloaminopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables peptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in proteolysis IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cytosol aminopeptidase
NP_001108319.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114847.1NP_001108319.1  cytosol aminopeptidase

    Status: PROVISIONAL

    Source sequence(s)
    BX901913
    UniProtKB/TrEMBL
    A0A8M1NGB5, A2BIC6
    Related
    ENSDARP00000083458.5, ENSDART00000089025.6
    Conserved Domains (2) summary
    PRK00913
    Location:34511
    PRK00913; multifunctional aminopeptidase A; Provisional
    cd00433
    Location:32510
    Peptidase_M17; Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    19418380..19431510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)